Device list

NGS-devices in the TRAIN Omics alliance Braunschweig-Göttingen-Hannover

Second generation sequencer

HZI

Dr. Robert Geffers
++49 (0) 531 6181 3058
write an e-mail

Type of device

Second generation sequencer

Sequencing mode

Sequencing by synthesis

Data output per run [Gbp]

167 to 6000

Runtime [h]

16 to 44

Applications
  • mRNA sequencing
  • totalRNA sequencing
  • smallRNA sequencing
  • microRNA sequencing
  • ChIP sequencing
  • CLIP-; Ribo-; sequencing (and more)
  • target enrichment sequencing
  • amplicon sequencing
  • exome sequencing
  • whole genome sequencing
Run mode
  • 1x 50bp single reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
  • 1x 100bp single reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
  • 1x 150bp single reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
  • 2x 50bp paired-end reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
  • 2x 100bp paired-end reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
  • 2x 150bp paired-end reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
HZI

Dr. Robert Geffers
++49 (0) 531 6181 3058
write an e-mail

Type of device

Second generation sequencer

Sequencing mode

Sequencing by synthesis

Data output per run [Gbp]

9 to 1000

Runtime [h]

7 to 144

Applications
  • mRNA sequencing
  • totalRNA sequencing
  • smallRNA sequencing
  • microRNA sequencing
  • ChIP sequencing
  • CLIP-; Ribo-; sequencing (und more)
  • target enrichment sequencing
  • amplicon sequencing
  • exome sequencing
  • whole genome sequencing
Research Core Unit Genomics (RCUG)

Dr. Oliver Dittrich-Breiholz
++49 (0) 511 532 5814
write an e-mail

Type of device

Second generation sequencer

Sequencing mode

Sequencing by synthesis

Data output per run [Gbp]

16 to 120

Runtime [h]

11 to 29

Applications
  • mRNA sequencing
  • totalRNA sequencing
  • smallRNA sequencing
  • microRNA sequencing
  • ChIP sequencing
  • CLIP-; Ribo-; sequencing (and more)
  • target enrichment sequencing
  • amplicon sequencing
  • exome sequencing (constricted)
  • whole genome sequencing (constricted)
Run mode
  • 1x 75bp single reads, 400 million cluster
  • 2x 75bp paired-end reads, 400 million cluster
  • 2x 150bp paired-end reads, 400 million cluster
  • 2x 75bp paired-end reads, 130 million cluster
  • 2x 150bp paired-end reads, 130 million cluster
DSMZ

Dr. Boyke Bunk
++49 (0) 531 2616 322
write an e-mail

Type of device

Second generation sequencer

Sequencing mode

Sequencing by synthesis

Data output per run [Gbp]

16 to 120

Runtime [h]

11 to 29

Applications
  • mRNA sequencing
  • totalRNA sequencing
  • smallRNA sequencing
  • microRNA sequencing
  • ChIP sequencing
  • CLIP-; Ribo-; sequencing (and more)
  • target enrichment sequencing
  • amplicon sequencing
  • exome sequencing (constricted)
  • whole genome sequencing (constricted)
Run mode
  • 1x 75bp single reads, 400 million cluster
  • 2x 75bp paired-end reads, 400 million cluster
  • 2x 150bp paired-end reads, 400 million cluster
  • 2x 75bp paired-end reads, 130 million cluster
  • 2x 150bp paired-end reads, 130 million cluster
Research Core Unit Genomics (RCUG)

Dr. Oliver Dittrich-Breiholz
++49 (0) 511 532 5814
write an e-mail

Type of device

Second generation sequencer

Sequencing mode

Sequencing by synthesis

Data output per run [Gbp]

16 to 120

Runtime [h]

11 to 29

Applications
  • mRNA sequencing
  • totalRNA sequencing
  • smallRNA sequencing
  • microRNA sequencing
  • ChIP sequencing
  • CLIP-; Ribo-; sequencing (and more)
  • target enrichment sequencing
  • amplicon sequencing
  • exome sequencing (constricted)
  • whole genome sequencing (constricted)
Run mode
  • 1x 75bp single reads, 400 million cluster
  • 2x 75bp paired-end reads, 400 million cluster
  • 2x 150bp paired-end reads, 400 million cluster
  • 2x 75bp paired-end reads, 130 million cluster
  • 2x 150bp paired-end reads, 130 million cluster
DSMZ

Dr. Boyke Bunk
++49 (0) 531 2616 322
write an e-mail

Type of device

Second generation sequencer

Sequencing mode

Sequencing by synthesis

Data output per run [Gbp]

0,54 to 15

Runtime [h]

4 to 56

Applications
  • small genone sequencing
  • small transcriptome sequencing
  • microRNA sequencing
  • target enrichment sequencing
  • amplicon sequencing
Run mode
  • 1x 36bp single reads, 12-15 million cluster (v2)
  • 2x 25bp paired-end reads, 12-15 million cluster (v2)
  • 2x 150bp paired-end reads, 12-15 million cluster (v2)
  • 2x 250bp paired-end reads, 12-15 million cluster (v2)
  • 2x 75bp paired-end reads, 22-25 million cluster (v3)
  • 2x 300bp paired-end reads, 22-25 million cluster (v3)
HZI

Dr. Robert Geffers
++49 (0) 531 6181 3058
write an e-mail

Type of device

Second generation sequencer

Sequencing mode

Sequencing by synthesis

Data output per run [Gbp]

0,54 to 15

Runtime [h]

4 to 56

Applications
  • small genone sequencing
  • small transcriptome sequencing
  • microRNA sequencing
  • target enrichment sequencing
  • amplicon sequencing
Run mode
  • 1x 36bp single reads, 12-15 million cluster (v2)
  • 2x 25bp paired-end reads, 12-15 million cluster (v2)
  • 2x 150bp paired-end reads, 12-15 million cluster (v2)
  • 2x 250bp paired-end reads, 12-15 million cluster (v2)
  • 2x 75bp paired-end reads, 22-25 million cluster (v3)
  • 2x 300bp paired-end reads, 22-25 million cluster (v3)
Research Core Unit Genomics (RCUG)

Dr. Oliver Dittrich-Breiholz
++49 (0) 511 532 5814
write an e-mail

Type of device

Second generation sequencer

Sequencing mode

Sequencing by synthesis

Data output per run [Gbp]

0,54 to 15

Runtime [h]

4 to 56

Applications
  • small genone sequencing
  • small transcriptome sequencing
  • microRNA sequencing
  • target enrichment sequencing
  • amplicon sequencing
Run mode
  • 1x 36bp single reads, 12-15 million cluster (v2)
  • 2x 25bp paired-end reads, 12-15 million cluster (v2)
  • 2x 150bp paired-end reads, 12-15 million cluster (v2)
  • 2x 250bp paired-end reads, 12-15 million cluster (v2)
  • 2x 75bp paired-end reads, 22-25 million cluster (v3)
  • 2x 300bp paired-end reads, 22-25 million cluster (v3)

Third generation sequencer

DSMZ

Dr. Boyke Bunk
++49 (0) 531 2616 322
write an e-mail

Type of device

Third generation sequencer

Sequencing mode

Single molecule sequencing

Data output per run [Gbp]

3 to 7

Runtime [h]

0,5 to 10

Applications
  • whole genome sequencing
  • long read sequencing
  • 16S rRNA gene amplicon sequencing
  • epigenetic modifications
  • isoform sequencing (RNA Seq)
  • targeted sequencing
Run mode
  • 30 min
  • 120 min
  • 240 min
  • 360 min
  • 480 min
  • 600 min
NIFE

Dr. Sascha Nico Stumpp
++49 (0) 511 532 1419
write an e-mail

Type of device

Third generation sequencer

Sequencing mode

Single molecule sequencing

Data output per run [Gbp]

3 to 7

Runtime [h]

0,5 to 10

Applications
  • whole genome sequencing
  • long read sequencing
  • 16S rRNA gene amplicon sequencing
  • epigenetic modifications
  • isoform sequencing (RNA Seq)
  • targeted sequencing
Run mode
  • 30 min
  • 120 min
  • 240 min
  • 360 min
  • 480 min
  • 600 min
DSMZ

Dr. Boyke Bunk
++49 (0) 531 2616 322
write an e-mail

Type of device

Third generation sequencer

Sequencing mode

Single molecule sequencing

Data output per run [Gbp]

0,5 to 1

Runtime [h]

0,5 to 6

Applications
  • whole genome sequencing
  • long read sequencing
  • 16S rRNA gene amplicon sequencing
  • epigenetic modifications
  • isoform sequencing (RNA Seq)
  • targeted sequencing
Run mode
  • 30 min
  • 120 min
  • 240 min
  • 360 min

Contact

Dr. Oliver Dittrich-Breiholz
MHH | Leader Research Core Unit Transcriptomics

phone:
++49 (0) 511 532 5814

write an e-mail

Robert Geffers
HZI | BRICS | Leader Genom Analytics

phone:
++49 (0) 531 6181 3058

write an e-mail