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Geräteliste

NGS-Geräte im TRAIN Omics Verbund Braunschweig-Göttingen-Hannover

Second generation sequencer

HZI

Dr. Robert Geffers
0531 6181 3058
E-mail verfassen

Gerätetyp

Second generation sequencer

Sequenziermodus

Sequencing by synthesis

Datenoutput pro Lauf [Gbp]

167 bis 6000

Laufzeit [h]

16 bis 44

Applikationen
  • mRNA sequencing
  • totalRNA sequencing
  • smallRNA sequencing
  • microRNA sequencing
  • ChIP sequencing
  • CLIP-; Ribo-; sequencing (und mehr)
  • target enrichment sequencing
  • amplicon sequencing
  • exome sequencing
  • whole genome sequencing
Laufmodi
  • 1x 50bp single reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
  • 1x 100bp single reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
  • 1x 150bp single reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
  • 2x 50bp paired-end reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
  • 2x 100bp paired-end reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
  • 2x 150bp paired-end reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
HZI

Dr. Robert Geffers
0531 6181 3058
E-mail verfassen

Gerätetyp

Second generation sequencer

Sequenziermodus

Sequencing by synthesis

Datenoutput pro Lauf [Gbp]

9 bis 1000

Laufzeit [h]

7 bis 144

Applikationen
  • mRNA sequencing
  • totalRNA sequencing
  • smallRNA sequencing
  • microRNA sequencing
  • ChIP sequencing
  • CLIP-; Ribo-; sequencing (und mehr)
  • target enrichment sequencing
  • amplicon sequencing
  • exome sequencing
  • whole genome sequencing
Research Core Unit Genomics (RCUG)

Dr. Oliver Dittrich-Breiholz
0511 532 5814
E-mail verfassen

Gerätetyp

Second generation sequencer

Sequenziermodus

Sequencing by synthesis

Datenoutput pro Lauf [Gbp]

16 bis 120

Laufzeit [h]

11 bis 29

Applikationen
  • mRNA sequencing
  • totalRNA sequencing
  • smallRNA sequencing
  • microRNA sequencing
  • ChIP sequencing
  • CLIP-; Ribo-; sequencing (und mehr)
  • target enrichment sequencing
  • amplicon sequencing
  • exome sequencing (eingeschränkt)
  • whole genome sequencing (eingeschränkt)
Laufmodi
  • 1x 75bp single reads, 400 million cluster
  • 2x 75bp paired-end reads, 400 million cluster
  • 2x 150bp paired-end reads, 400 million cluster
  • 2x 75bp paired-end reads, 130 million cluster
  • 2x 150bp paired-end reads, 130 million cluster
DSMZ

Dr. Boyke Bunk
0531 2616 322
E-mail verfassen

Gerätetyp

Second generation sequencer

Sequenziermodus

Sequencing by synthesis

Datenoutput pro Lauf [Gbp]

16 bis 120

Laufzeit [h]

11 bis 29

Applikationen
  • mRNA sequencing
  • totalRNA sequencing
  • smallRNA sequencing
  • microRNA sequencing
  • ChIP sequencing
  • CLIP-; Ribo-; sequencing (und mehr)
  • target enrichment sequencing
  • amplicon sequencing
  • exome sequencing (eingeschränkt)
  • whole genome sequencing (eingeschränkt)
Laufmodi
  • 1x 75bp single reads, 400 million cluster
  • 2x 75bp paired-end reads, 400 million cluster
  • 2x 150bp paired-end reads, 400 million cluster
  • 2x 75bp paired-end reads, 130 million cluster
  • 2x 150bp paired-end reads, 130 million cluster
Research Core Unit Genomics (RCUG)

Dr. Oliver Dittrich-Breiholz
0511 532 5814
E-mail verfassen

Gerätetyp

Second generation sequencer

Sequenziermodus

Sequencing by synthesis

Datenoutput pro Lauf [Gbp]

16 bis 120

Laufzeit [h]

11 bis 29

Applikationen
  • mRNA sequencing
  • totalRNA sequencing
  • smallRNA sequencing
  • microRNA sequencing
  • ChIP sequencing
  • CLIP-; Ribo-; sequencing (und mehr)
  • target enrichment sequencing
  • amplicon sequencing
  • exome sequencing (eingeschränkt)
  • whole genome sequencing (eingeschränkt)
Laufmodi
  • 1x 75bp single reads, 400 million cluster
  • 2x 75bp paired-end reads, 400 million cluster
  • 2x 150bp paired-end reads, 400 million cluster
  • 2x 75bp paired-end reads, 130 million cluster
  • 2x 150bp paired-end reads, 130 million cluster
DSMZ

Dr. Boyke Bunk
0531 2616 322
E-mail verfassen

Gerätetyp

Second generation sequencer

Sequenziermodus

Sequencing by synthesis

Datenoutput pro Lauf [Gbp]

0,54 bis 15

Laufzeit [h]

4 bis 56

Applikationen
  • small genone sequencing
  • small transcriptome sequencing
  • microRNA sequencing
  • target enrichment sequencing
  • amplicon sequencing
Laufmodi
  • 1x 36bp single reads, 12-15 million cluster (v2)
  • 2x 25bp paired-end reads, 12-15 million cluster (v2)
  • 2x 150bp paired-end reads, 12-15 million cluster (v2)
  • 2x 250bp paired-end reads, 12-15 million cluster (v2)
  • 2x 75bp paired-end reads, 22-25 million cluster (v3)
  • 2x 300bp paired-end reads, 22-25 million cluster (v3)
HZI

Dr. Robert Geffers
0531 6181 3058
E-mail verfassen

Gerätetyp

Second generation sequencer

Sequenziermodus

Sequencing by synthesis

Datenoutput pro Lauf [Gbp]

0,54 bis 15

Laufzeit [h]

4 bis 56

Applikationen
  • small genone sequencing
  • small transcriptome sequencing
  • microRNA sequencing
  • target enrichment sequencing
  • amplicon sequencing
Laufmodi
  • 1x 36bp single reads, 12-15 million cluster (v2)
  • 2x 25bp paired-end reads, 12-15 million cluster (v2)
  • 2x 150bp paired-end reads, 12-15 million cluster (v2)
  • 2x 250bp paired-end reads, 12-15 million cluster (v2)
  • 2x 75bp paired-end reads, 22-25 million cluster (v3)
  • 2x 300bp paired-end reads, 22-25 million cluster (v3)
Research Core Unit Genomics (RCUG)

Dr. Oliver Dittrich-Breiholz
0511 532 5814
E-mail verfassen

Gerätetyp

Second generation sequencer

Sequenziermodus

Sequencing by synthesis

Datenoutput pro Lauf [Gbp]

0,54 bis 15

Laufzeit [h]

4 bis 56

Applikationen
  • small genone sequencing
  • small transcriptome sequencing
  • microRNA sequencing
  • target enrichment sequencing
  • amplicon sequencing
Laufmodi
  • 1x 36bp single reads, 12-15 million cluster (v2)
  • 2x 25bp paired-end reads, 12-15 million cluster (v2)
  • 2x 150bp paired-end reads, 12-15 million cluster (v2)
  • 2x 250bp paired-end reads, 12-15 million cluster (v2)
  • 2x 75bp paired-end reads, 22-25 million cluster (v3)
  • 2x 300bp paired-end reads, 22-25 million cluster (v3)

Third generation sequencer

DSMZ

Dr. Boyke Bunk
0531 2616 322
E-mail verfassen

Gerätetyp

Third generation sequencer

Sequenziermodus

Single molecule sequencing

Datenoutput pro Lauf [Gbp]

3 bis 7

Laufzeit [h]

0,5 bis 10

Applikationen
  • whole genome sequencing
  • long read sequencing
  • 16S rRNA gene amplicon sequencing
  • epigenetic modifications
  • isoform sequencing (RNA Seq)
  • targeted sequencing
Laufmodi
  • 30 min
  • 120 min
  • 240 min
  • 360 min
  • 480 min
  • 600 min
NIFE

Dr. Sascha Nico Stumpp
0511 532 1419
E-mail verfassen

Gerätetyp

Third generation sequencer

Sequenziermodus

Single molecule sequencing

Datenoutput pro Lauf [Gbp]

3 bis 7

Laufzeit [h]

0,5 bis 10

Applikationen
  • whole genome sequencing
  • long read sequencing
  • 16S rRNA gene amplicon sequencing
  • epigenetic modifications
  • isoform sequencing (RNA Seq)
  • targeted sequencing
Laufmodi
  • 30 min
  • 120 min
  • 240 min
  • 360 min
  • 480 min
  • 600 min
DSMZ

Dr. Boyke Bunk
0531 2616 322
E-mail verfassen

Gerätetyp

Third generation sequencer

Sequenziermodus

Single molecule sequencing

Datenoutput pro Lauf [Gbp]

0,5 bis 1

Laufzeit [h]

0,5 bis 6

Applikationen
  • whole genome sequencing
  • long read sequencing
  • 16S rRNA gene amplicon sequencing
  • epigenetic modifications
  • isoform sequencing (RNA Seq)
  • targeted sequencing
Laufmodi
  • 30 min
  • 120 min
  • 240 min
  • 360 min

Ansprechpartner

Dr. Oliver Dittrich-Breiholz
MHH | Leiter der Zentralen Forschungseinrichtung Genomics

Telefon:
0511 532 5814

E-mail verfassen

Dr. Robert Geffers
HZI | BRICS | Leiter Genomanalytik

Telefon:
0531 6181 3058

E-mail verfassen