Geräteliste
NGS-Geräte im TRAIN Omics Verbund Braunschweig-Göttingen-Hannover
Second generation sequencer
HZI
Dr. Robert Geffers
0531 6181 3058
E-mail verfassen
Gerätetyp
Second generation sequencer
Sequenziermodus
Sequencing by synthesis
Datenoutput pro Lauf [Gbp]
167 bis 6000
Laufzeit [h]
16 bis 44
Applikationen
- mRNA sequencing
- totalRNA sequencing
- smallRNA sequencing
- microRNA sequencing
- ChIP sequencing
- CLIP-; Ribo-; sequencing (und mehr)
- target enrichment sequencing
- amplicon sequencing
- exome sequencing
- whole genome sequencing
Laufmodi
- 1x 50bp single reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
- 1x 100bp single reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
- 1x 150bp single reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
- 2x 50bp paired-end reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
- 2x 100bp paired-end reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
- 2x 150bp paired-end reads, 1,5 billion cluster (S1), 3 billion cluster (S2), 9 billion cluster (S4)
HZI
Dr. Robert Geffers
0531 6181 3058
E-mail verfassen
Gerätetyp
Second generation sequencer
Sequenziermodus
Sequencing by synthesis
Datenoutput pro Lauf [Gbp]
9 bis 1000
Laufzeit [h]
7 bis 144
Applikationen
- mRNA sequencing
- totalRNA sequencing
- smallRNA sequencing
- microRNA sequencing
- ChIP sequencing
- CLIP-; Ribo-; sequencing (und mehr)
- target enrichment sequencing
- amplicon sequencing
- exome sequencing
- whole genome sequencing
Research Core Unit Genomics (RCUG)
Dr. Oliver Dittrich-Breiholz
0511 532 5814
E-mail verfassen
Gerätetyp
Second generation sequencer
Sequenziermodus
Sequencing by synthesis
Datenoutput pro Lauf [Gbp]
16 bis 120
Laufzeit [h]
11 bis 29
Applikationen
- mRNA sequencing
- totalRNA sequencing
- smallRNA sequencing
- microRNA sequencing
- ChIP sequencing
- CLIP-; Ribo-; sequencing (und mehr)
- target enrichment sequencing
- amplicon sequencing
- exome sequencing (eingeschränkt)
- whole genome sequencing (eingeschränkt)
Laufmodi
- 1x 75bp single reads, 400 million cluster
- 2x 75bp paired-end reads, 400 million cluster
- 2x 150bp paired-end reads, 400 million cluster
- 2x 75bp paired-end reads, 130 million cluster
- 2x 150bp paired-end reads, 130 million cluster
DSMZ
Dr. Boyke Bunk
0531 2616 322
E-mail verfassen
Gerätetyp
Second generation sequencer
Sequenziermodus
Sequencing by synthesis
Datenoutput pro Lauf [Gbp]
16 bis 120
Laufzeit [h]
11 bis 29
Applikationen
- mRNA sequencing
- totalRNA sequencing
- smallRNA sequencing
- microRNA sequencing
- ChIP sequencing
- CLIP-; Ribo-; sequencing (und mehr)
- target enrichment sequencing
- amplicon sequencing
- exome sequencing (eingeschränkt)
- whole genome sequencing (eingeschränkt)
Laufmodi
- 1x 75bp single reads, 400 million cluster
- 2x 75bp paired-end reads, 400 million cluster
- 2x 150bp paired-end reads, 400 million cluster
- 2x 75bp paired-end reads, 130 million cluster
- 2x 150bp paired-end reads, 130 million cluster
Research Core Unit Genomics (RCUG)
Dr. Oliver Dittrich-Breiholz
0511 532 5814
E-mail verfassen
Gerätetyp
Second generation sequencer
Sequenziermodus
Sequencing by synthesis
Datenoutput pro Lauf [Gbp]
16 bis 120
Laufzeit [h]
11 bis 29
Applikationen
- mRNA sequencing
- totalRNA sequencing
- smallRNA sequencing
- microRNA sequencing
- ChIP sequencing
- CLIP-; Ribo-; sequencing (und mehr)
- target enrichment sequencing
- amplicon sequencing
- exome sequencing (eingeschränkt)
- whole genome sequencing (eingeschränkt)
Laufmodi
- 1x 75bp single reads, 400 million cluster
- 2x 75bp paired-end reads, 400 million cluster
- 2x 150bp paired-end reads, 400 million cluster
- 2x 75bp paired-end reads, 130 million cluster
- 2x 150bp paired-end reads, 130 million cluster
DSMZ
Dr. Boyke Bunk
0531 2616 322
E-mail verfassen
Gerätetyp
Second generation sequencer
Sequenziermodus
Sequencing by synthesis
Datenoutput pro Lauf [Gbp]
0,54 bis 15
Laufzeit [h]
4 bis 56
Applikationen
- small genone sequencing
- small transcriptome sequencing
- microRNA sequencing
- target enrichment sequencing
- amplicon sequencing
Laufmodi
- 1x 36bp single reads, 12-15 million cluster (v2)
- 2x 25bp paired-end reads, 12-15 million cluster (v2)
- 2x 150bp paired-end reads, 12-15 million cluster (v2)
- 2x 250bp paired-end reads, 12-15 million cluster (v2)
- 2x 75bp paired-end reads, 22-25 million cluster (v3)
- 2x 300bp paired-end reads, 22-25 million cluster (v3)
HZI
Dr. Robert Geffers
0531 6181 3058
E-mail verfassen
Gerätetyp
Second generation sequencer
Sequenziermodus
Sequencing by synthesis
Datenoutput pro Lauf [Gbp]
0,54 bis 15
Laufzeit [h]
4 bis 56
Applikationen
- small genone sequencing
- small transcriptome sequencing
- microRNA sequencing
- target enrichment sequencing
- amplicon sequencing
Laufmodi
- 1x 36bp single reads, 12-15 million cluster (v2)
- 2x 25bp paired-end reads, 12-15 million cluster (v2)
- 2x 150bp paired-end reads, 12-15 million cluster (v2)
- 2x 250bp paired-end reads, 12-15 million cluster (v2)
- 2x 75bp paired-end reads, 22-25 million cluster (v3)
- 2x 300bp paired-end reads, 22-25 million cluster (v3)
Research Core Unit Genomics (RCUG)
Dr. Oliver Dittrich-Breiholz
0511 532 5814
E-mail verfassen
Gerätetyp
Second generation sequencer
Sequenziermodus
Sequencing by synthesis
Datenoutput pro Lauf [Gbp]
0,54 bis 15
Laufzeit [h]
4 bis 56
Applikationen
- small genone sequencing
- small transcriptome sequencing
- microRNA sequencing
- target enrichment sequencing
- amplicon sequencing
Laufmodi
- 1x 36bp single reads, 12-15 million cluster (v2)
- 2x 25bp paired-end reads, 12-15 million cluster (v2)
- 2x 150bp paired-end reads, 12-15 million cluster (v2)
- 2x 250bp paired-end reads, 12-15 million cluster (v2)
- 2x 75bp paired-end reads, 22-25 million cluster (v3)
- 2x 300bp paired-end reads, 22-25 million cluster (v3)
Third generation sequencer
DSMZ
Dr. Boyke Bunk
0531 2616 322
E-mail verfassen
Gerätetyp
Third generation sequencer
Sequenziermodus
Single molecule sequencing
Datenoutput pro Lauf [Gbp]
3 bis 7
Laufzeit [h]
0,5 bis 10
Applikationen
- whole genome sequencing
- long read sequencing
- 16S rRNA gene amplicon sequencing
- epigenetic modifications
- isoform sequencing (RNA Seq)
- targeted sequencing
Laufmodi
- 30 min
- 120 min
- 240 min
- 360 min
- 480 min
- 600 min
NIFE
Dr. Sascha Nico Stumpp
0511 532 1419
E-mail verfassen
Gerätetyp
Third generation sequencer
Sequenziermodus
Single molecule sequencing
Datenoutput pro Lauf [Gbp]
3 bis 7
Laufzeit [h]
0,5 bis 10
Applikationen
- whole genome sequencing
- long read sequencing
- 16S rRNA gene amplicon sequencing
- epigenetic modifications
- isoform sequencing (RNA Seq)
- targeted sequencing
Laufmodi
- 30 min
- 120 min
- 240 min
- 360 min
- 480 min
- 600 min
DSMZ
Dr. Boyke Bunk
0531 2616 322
E-mail verfassen
Gerätetyp
Third generation sequencer
Sequenziermodus
Single molecule sequencing
Datenoutput pro Lauf [Gbp]
0,5 bis 1
Laufzeit [h]
0,5 bis 6
Applikationen
- whole genome sequencing
- long read sequencing
- 16S rRNA gene amplicon sequencing
- epigenetic modifications
- isoform sequencing (RNA Seq)
- targeted sequencing
Laufmodi
- 30 min
- 120 min
- 240 min
- 360 min